Ma Somsouk, MD, MAS

Professor In Residence

Center for Vulnerable Populations, Gastroenterology

1. Leveraging digital health and care coordination to improve health services delivery to vulnerable populations. We embrace big data and technology to design, develop, and deliver economic and effective services for patients in the area of cancer screening and follow-up.

2. Development of intestinal organoids from humans to understand barrier function, systemic inflammation, inflammatory bowel disease, HIV persistence, infection, and microbiome. Approaches employed: organoid models, isolation of epithelial cells, lymphocytes, microbiota, and interventional trials such as fecal transplant.

Education
M.A.S., 2008 - , UCSF, Epidemiology and Biostatistics
Fellowship, 2008 - , UCSF, Gastroenterology & Hepatology
Residency, 2005 - , UCLA-Harbor Medical Center
M.D., 2002 - , Harvard Medical School
Fellowship, 2001 - , Beijing Medical University, Research Scholar
B.A., 1997 - , Pomona College, Chemistry
Honors and Awards
  • Dean M. Craig Endowed Chair in Gastrointestinal Medicine, UCSF, 2016
  • AGA Fellow, American Gastroenterology Association, 2015
  • Distinction in Mentoring, UCSF Academic Senate Nomination, 2015
  • Paul Dudley White / Andrew Sellard Fellowship, Harvard, 2001
  • Magna Cum Laude, Pomona College, 1997
Publications
  1. Neidleman J, Luo X, Frouard J, Xie G, Hsiao F, Ma T, Morcilla V, Lee A, Telwatte S, Thomas R, Tamaki W, Wheeler B, Hoh R, Somsouk M, Vohra P, Milush J, James KS, Archin NM, Hunt PW, Deeks SG, Yukl SA, Palmer S, Greene WC, Roan NR. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir. 2020. PMID: 32990219


  2. Telwatte S, Kim P, Chen TH, Milush JM, Somsouk M, Deeks SG, Hunt PW, Wong JK, Yukl SA. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents. 2020. PMID: 32910065


  3. Jiang C, Lian X, Gao C, Sun X, Einkauf KB, Chevalier JM, Chen SMY, Hua S, Rhee B, Chang K, Blackmer JE, Osborn M, Peluso MJ, Hoh R, Somsouk M, Milush J, Bertagnolli LN, Sweet SE, Varriale JA, Burbelo PD, Chun TW, Laird GM, Serrao E, Engelman AN, Carrington M, Siliciano RF, Siliciano JM, Deeks SG, Walker BD, Lichterfeld M, Yu XG. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Distinct viral reservoirs in individuals with spontaneous control of HIV-1. 2020. PMID: 32848246


  4. Lee B, Patel S, Rachocki C, Issaka R, Vittinghoff E, Shapiro JA, Ladabaum U, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial. 2020. PMID: 32748345


  5. SahBandar IN, Chew GM, Corley MJ, Pang APS, Tsai N, Hanks N, Khadka VS, Klatt NR, Hensley-McBain T, Somsouk M, Vujkovic-Cvijin I, Chow DC, Shikuma CM, Ndhlovu LC. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade. 2020. PMID: 32675558


  6. Huynh MP, Bradshaw PT, Tana MM, Rachocki C, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Obesity and metabolic outcomes in a safety-net health system. 2020. PMID: 32727275


  7. Sharma AE, Lyson HC, Cherian R, Somsouk M, Schillinger D, Sarkar U. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems. 2020. PMID: 32467445


  8. Lee SA, Telwatte S, Hatano H, Kashuba ADM, Cottrell ML, Hoh R, Liegler TJ, Stephenson S, Somsouk M, Hunt PW, Deeks SG, Yukl S, Savic RM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay. 2020. PMID: 32168200


  9. Issaka RB, Rachocki C, Huynh MP, Chen E, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System. 2020. PMID: 32236885


  10. Somsouk M, Rachocki C, Mannalithara A, Garcia D, Laleau V, Grimes B, Issaka RB, Chen E, Vittinghoff E, Shapiro JA, Ladabaum U. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial. 2019. PMID: 31187126


  11. Anderson JL, Khoury G, Fromentin R, Solomon A, Chomont N, Sinclair E, Milush JM, Hartogensis W, Bacchetti P, Roche M, Tumpach C, Gartner M, Pitman MC, Epling CL, Hoh R, Hecht FM, Somsouk M, Cameron PU, Deeks SG, Lewin SR. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy. 2019. PMID: 31796951


  12. Wang Y, Lifshitz L, Gellatly K, Vinton CL, Busman-Sahay K, McCauley S, Vangala P, Kim K, Derr A, Jaiswal S, Kucukural A, McDonel P, Hunt PW, Greenough T, Houghton J, Somsouk M, Estes JD, Brenchley JM, Garber M, Deeks SG, Luban J. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells. 2020. PMID: 32066947


  13. Lee E, von Stockenstrom S, Morcilla V, Odevall L, Hiener B, Shao W, Hartogensis W, Bacchetti P, Milush J, Liegler T, Sinclair E, Hatano H, Hoh R, Somsouk M, Hunt P, Boritz E, Douek D, Fromentin R, Chomont N, Deeks SG, Hecht FM, Palmer S. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites. 2019. PMID: 31723024


  14. Sangaramoorthy M, Yang J, DeRouen MC, Ho C, Somsouk M, Tana MM, Thompson CA, Gibbons J, Gomez SL, Shariff-Marco S. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Disparities in Hepatocellular Carcinoma Incidence in California: An Update. 2019. PMID: 31719066


  15. Belle NM, Ji Y, Herbine K, Wei Y, Park J, Zullo K, Hung LY, Srivatsa S, Young T, Oniskey T, Pastore C, Nieves W, Somsouk M, Herbert DR. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths. 2019. PMID: 31562318


  16. Selvig D, Piceno Y, Terdiman J, Zydek M, Umetsu SE, Balitzer D, Fadrosh D, Lynch K, Lamere B, Leith T, Kassam Z, Beck K, Lewin S, Ma A, Somsouk M, Lynch SV, El-Nachef N. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study. 2019. PMID: 31302808


  17. Vujkovic-Cvijin I, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration. 2019. PMID: 31037552


  18. Vásquez JJ, Aguilar-Rodriguez BL, Rodriguez L, Hogan LE, Somsouk M, McCune JM, Deeks SG, Laszik ZG, Hunt PW, Henrich TJ. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals. 2019. PMID: 31139759


  19. Utay NS, Somasunderam A, Hinkle JE, Petschow BW, Detzel CJ, Somsouk M, Fichtenbaum CJ, Weaver EM, Shaw AL, Asmuth DM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART. 2019. PMID: 31139758


  20. Gutin L, Piceno Y, Fadrosh D, Lynch K, Zydek M, Kassam Z, LaMere B, Terdiman J, Ma A, Somsouk M, Lynch S, El-Nachef N. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile. 2019. PMID: 31316785


  21. Hensley-McBain T, Wu MC, Manuzak JA, Cheu RK, Gustin A, Driscoll CB, Zevin AS, Miller CJ, Coronado E, Smith E, Chang J, Gale M, Somsouk M, Burgener AD, Hunt PW, Hope TJ, Collier AC, Klatt NR. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection. 2019. PMID: 30973942


  22. Maidji E, Moreno ME, Rivera JM, Joshi P, Galkina SA, Kosikova G, Somsouk M, Stoddart CA. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice. 2019. PMID: 30871222


  23. Wang A, Rachocki C, Shapiro JA, Issaka RB, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples. 2018. PMID: 30503967


  24. Telwatte S, Lee S, Somsouk M, Hatano H, Baker C, Kaiser P, Kim P, Chen TH, Milush J, Hunt PW, Deeks SG, Wong JK, Yukl SA. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency. 2018. PMID: 30440043


  25. Issaka RB, Avila P, Whitaker E, Bent S, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review. 2018. PMID: 30367972


  26. Lidofsky A, Holmes JA, Feeney ER, Kruger AJ, Salloum S, Zheng H, Seguin IS, Altinbas A, Masia R, Corey KE, Gustafson JL, Schaefer EA, Hunt PW, Deeks S, Somsouk M, Chew KW, Chung RT, Alatrakchi N. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection. 2018. PMID: 29868909


  27. Ellis L, Abrahão R, McKinley M, Yang J, Somsouk M, Marchand LL, Cheng I, Gomez SL, Shariff-Marco S. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014. 2018. PMID: 30115679


  28. Lee B, Holt EW, Wong RJ, Sewell JL, Somsouk M, Khalili M, Maher JJ, Tana MM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved. 2018. PMID: 29890851


  29. Alsayid M, Singh MH, Issaka R, Laleau V, Day L, Lee J, Allison J, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light. 2018. PMID: 29660528


  30. Chitre AS, Kattah MG, Rosli YY, Pao M, Deswal M, Deeks SG, Hunt PW, Abdel-Mohsen M, Montaner LJ, Kim CC, Ma A, Somsouk M, McCune JM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function. 2018. PMID: 29505600


  31. Hogan LE, Vasquez J, Hobbs KS, Hanhauser E, Aguilar-Rodriguez B, Hussien R, Thanh C, Gibson EA, Carvidi AB, Smith LCB, Khan S, Trapecar M, Sanjabi S, Somsouk M, Stoddart CA, Kuritzkes DR, Deeks SG, Henrich TJ. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30. 2018. PMID: 29470552


  32. Wen JW, Kohn MA, Wong R, Somsouk M, Khalili M, Maher J, Tana MM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans. Volume 113 of Issue 2. 2018. PMID: 29380822


  33. Kiniry BE, Hunt PW, Hecht FM, Somsouk M, Deeks SG, Shacklett BL. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection. 2018. PMID: 29352005


  34. Issaka RB, Singh MH, Rachocki C, Day LW, Horton C, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations. 2018. PMID: 29330098


  35. Ivey SL, Mukherjea A, Patel A, Kapoor N, Rau S, Kazi E, Bhatia J, Somsouk M, Tseng W. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators. 2018. PMID: 30449755


  36. Hiatt RA, Sibley A, Fejerman L, Glantz S, Nguyen T, Pasick R, Palmer N, Perkins A, Potter MB, Somsouk M, Vargas RA, van 't Veer LJ, Ashworth A. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer. Volume 37 of Issue 1. 2018. PMID: 29309234


  37. Lin D, Soetikno RM, McQuaid K, Pham C, Doan G, Mou S, Shergill AK, Somsouk M, Rouse RV, Kaltenbach T. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications. Volume 87 of Issue 4. 2017. PMID: 29208464


  38. Kiniry BE, Li S, Ganesh A, Hunt PW, Somsouk M, Skinner PJ, Deeks SG, Shacklett BL. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection. Volume 11 of Issue 3. 2017. PMID: 29139476


  39. Trapecar M, Khan S, Roan NR, Chen TH, Telwatte S, Deswal M, Pao M, Somsouk M, Deeks SG, Hunt PW, Yukl S, Sanjabi S. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies. Volume 33 of Issue S1. 2017. PMID: 28882052


  40. Asmuth DM, Hinkle JE, LaMarca A, Fichtenbaum CJ, Somsouk M, Utay NS, Shaw AL, Petschow BW, Detzel CJ, Weaver EM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea. Volume 18 of Issue 5-6. 2017. PMID: 29210625


  41. Cockerham LR, Yukl SA, Harvill K, Somsouk M, Joshi SK, Sinclair E, Liegler T, Hoh R, Lyons S, Hunt PW, Rupert A, Sereti I, Morcock DR, Rhodes A, Emson C, Hellerstein MK, Estes JD, Lewin S, Deeks SG, Hatano H. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals. Volume 2 of Issue 3. 2017. PMID: 28936485


  42. Seang S, Somasunderam A, Nigalye M, Somsouk M, Schacker TW, Sanchez JL, Hunt PW, Utay NS, Lake JE. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection. Volume 2 of Issue 2. 2017. PMID: 28782046


  43. Vujkovic-Cvijin I, Rutishauser RL, Pao M, Hunt PW, Lynch SV, McCune JM, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals. Volume 8 of Issue 5. 2017. PMID: 28541799


  44. Khoury G, Fromentin R, Solomon A, Hartogensis W, Killian M, Hoh R, Somsouk M, Hunt PW, Girling V, Sinclair E, Bacchetti P, Anderson JL, Hecht FM, Deeks SG, Cameron PU, Chomont N, Lewin SR. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy. Volume 215 of Issue 6. 2017. PMID: 28453847


  45. Maidji E, Somsouk M, Rivera JM, Hunt PW, Stoddart CA. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction. Volume 13 of Issue 2. 2017. PMID: 28241080


  46. Neidleman JA, Chen JC, Kohgadai N, Müller JA, Laustsen A, Thavachelvam K, Jang KS, Stürzel CM, Jones JJ, Ochsenbauer C, Chitre A, Somsouk M, Garcia MM, Smith JF, Greenblatt RM, Münch J, Jakobsen MR, Giudice LC, Greene WC, Roan NR. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells. Volume 13 of Issue 2. 2017. PMID: 28207890


  47. Kouanda AM, Somsouk M, Sewell JL, Day LW. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis. Volume 86 of Issue 1. 2017. PMID: 28174123


  48. Issaka RB, Singh MH, Oshima SM, Laleau VJ, Rachocki CD, Chen EH, Day LW, Sarkar U, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System. Volume 112 of Issue 2. 2016. PMID: 28154400


  49. Kiniry BE, Ganesh A, Critchfield JW, Hunt PW, Hecht FM, Somsouk M, Deeks SG, Shacklett BL. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection. Volume 10 of Issue 4. 2016. PMID: 27827375


  50. Paquin-Proulx D, Ching C, Vujkovic-Cvijin I, Fadrosh D, Loh L, Huang Y, Somsouk M, Lynch SV, Hunt PW, Nixon DF, SenGupta D. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection. Volume 10 of Issue 1. 2016. PMID: 27049061


  51. Shergill AK, Conners EE, McQuaid KR, Epstein S, Ryan JC, Shah JN, Inadomi J, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer. Volume 82 of Issue 3. 2015. PMID: 25936449


  52. von Stockenstrom S, Odevall L, Lee E, Sinclair E, Bacchetti P, Killian M, Epling L, Shao W, Hoh R, Ho T, Faria NR, Lemey P, Albert J, Hunt P, Loeb L, Pilcher C, Poole L, Hatano H, Somsouk M, Douek D, Boritz E, Deeks SG, Hecht FM, Palmer S. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy. Volume 212 of Issue 4. 2015. PMID: 25712966


  53. Somsouk M, Estes JD, Deleage C, Dunham RM, Albright R, Inadomi JM, Martin JN, Deeks SG, McCune JM, Hunt PW. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Gut epithelial barrier and systemic inflammation during chronic HIV infection. Volume 29 of Issue 1. 2015. PMID: 25387317


  54. Somsouk M, Dunham RM, Cohen M, Albright R, Abdel-Mohsen M, Liegler T, Lifson J, Piatak M, Gorelick R, Huang Y, Wu Y, Hsue PY, Martin JN, Deeks SG, McCune JM, Hunt PW. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial. Volume 9 of Issue 12. 2014. PMID: 25545673


  55. Sanchez JL, Hunt PW, Reilly CS, Hatano H, Beilman GJ, Khoruts A, Jasurda JS, Somsouk M, Thorkelson A, Russ S, Anderson J, Deeks SG, Schacker TW. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions. Volume 211 of Issue 7. 2014. PMID: 25344521


  56. Ribeiro SP, Milush JM, Cunha-Neto E, Kallas EG, Kalil J, Somsouk M, Hunt PW, Deeks SG, Nixon DF, SenGupta D. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection. Volume 88 of Issue 23. 2014. PMID: 25253339


  57. Serrano-Villar S, Sainz T, Lee SA, Hunt PW, Sinclair E, Shacklett BL, Ferre AL, Hayes TL, Somsouk M, Hsue PY, Van Natta ML, Meinert CL, Lederman MM, Hatano H, Jain V, Huang Y, Hecht FM, Martin JN, McCune JM, Moreno S, Deeks SG. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality. Volume 10 of Issue 5. 2014. PMID: 24831517


  58. Somsouk M, To'o K, Ali M, Vittinghoff E, Yeh BM, Yee J, Monto A, Inadomi JM, Aslam R. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Esophageal varices on computed tomography and subsequent variceal hemorrhage. Volume 39 of Issue 2. 2014. PMID: 24366107


  59. Gupta S, Sussman DA, Doubeni CA, Anderson DS, Day L, Deshpande AR, Elmunzer BJ, Laiyemo AO, Mendez J, Somsouk M, Allison J, Bhuket T, Geng Z, Green BB, Itzkowitz SH, Martinez ME. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Challenges and possible solutions to colorectal cancer screening for the underserved. Volume 106 of Issue 4. 2014. PMID: 24681602


  60. Day LW, Siao D, Inadomi JM, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis. Volume 46 of Issue 5. 2014. PMID: 24627086


  61. Day LW, Lin L, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis. Volume 2 of Issue 1. 2014. PMID: 26134610


  62. Dunham RM, Vujkovic-Cvijin I, Yukl SA, Broadhurst MJ, Loke P, Albright RG, Wong JK, Lederman MM, Somsouk M, Hunt PW, Martin JN, Deeks SG, McCune JM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Discordance between peripheral and colonic markers of inflammation during suppressive ART. Volume 65 of Issue 2. 2014. PMID: 24121758


  63. Yukl SA, Sinclair E, Somsouk M, Hunt PW, Epling L, Killian M, Girling V, Li P, Havlir DV, Deeks SG, Wong JK, Hatano H. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells. Volume 28 of Issue 3. 2014. PMID: 24322272


  64. Sewell JL, Somsouk M, Shah SC, Day LW. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply. Volume 38 of Issue 11-12. 2013. PMID: 24206377


  65. Josefsson L, von Stockenstrom S, Faria NR, Sinclair E, Bacchetti P, Killian M, Epling L, Tan A, Ho T, Lemey P, Shao W, Hunt PW, Somsouk M, Wylie W, Douek DC, Loeb L, Custer J, Hoh R, Poole L, Deeks SG, Hecht F, Palmer S. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time. Volume 110 of Issue 51. 2013. PMID: 24277811


  66. Hatano H, Yukl SA, Ferre AL, Graf EH, Somsouk M, Sinclair E, Abdel-Mohsen M, Liegler T, Harvill K, Hoh R, Palmer S, Bacchetti P, Hunt PW, Martin JN, McCune JM, Tracy RP, Busch MP, O'Doherty U, Shacklett BL, Wong JK, Deeks SG. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers. Volume 9 of Issue 10. 2013. PMID: 24130489


  67. Siao D, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Helicobacter pylori: evidence-based review with a focus on immigrant populations. Volume 29 of Issue 3. 2013. PMID: 24065381


  68. Hatano H, Somsouk M, Sinclair E, Harvill K, Gilman L, Cohen M, Hoh R, Hunt PW, Martin JN, Wong JK, Deeks SG, Yukl SA. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers. Volume 27 of Issue 14. 2013. PMID: 24157906


  69. Shah SC, Day LW, Somsouk M, Sewell JL. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth. Volume 38 of Issue 8. 2013. PMID: 24004101


  70. Vujkovic-Cvijin I, Dunham RM, Iwai S, Maher MC, Albright RG, Broadhurst MJ, Hernandez RD, Lederman MM, Huang Y, Somsouk M, Deeks SG, Hunt PW, Lynch SV, McCune JM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism. Volume 5 of Issue 193. 2013. PMID: 23843452


  71. Hunt PW, Shulman NS, Hayes TL, Dahl V, Somsouk M, Funderburg NT, McLaughlin B, Landay AL, Adeyemi O, Gilman LE, Clagett B, Rodriguez B, Martin JN, Schacker TW, Shacklett BL, Palmer S, Lederman MM, Deeks SG. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial. Volume 121 of Issue 23. 2013. PMID: 23589670


  72. Ho C, Kornfield R, Vittinghoff E, Inadomi J, Yee H, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Late presentation of colorectal cancer in a vulnerable population. Volume 108 of Issue 4. 2013. PMID: 23552303


  73. Eriksson S, Graf EH, Dahl V, Strain MC, Yukl SA, Lysenko ES, Bosch RJ, Lai J, Chioma S, Emad F, Abdel-Mohsen M, Hoh R, Hecht F, Hunt P, Somsouk M, Wong J, Johnston R, Siliciano RF, Richman DD, O'Doherty U, Palmer S, Deeks SG, Siliciano JD. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies. Volume 9 of Issue 2. 2013. PMID: 23459007


  74. Leeansyah E, Ganesh A, Quigley MF, Sönnerborg A, Andersson J, Hunt PW, Somsouk M, Deeks SG, Martin JN, Moll M, Shacklett BL, Sandberg JK. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection. Volume 121 of Issue 7. 2012. PMID: 23243281


  75. Shaw JM, Hunt PW, Critchfield JW, McConnell DH, Garcia JC, Pollard RB, Somsouk M, Deeks SG, Shacklett BL. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation. Volume 29 of Issue 1. 2012. PMID: 22998457


  76. Inadomi JM, Vijan S, Janz NK, Fagerlin A, Thomas JP, Lin YV, Muñoz R, Lau C, Somsouk M, El-Nachef N, Hayward RA. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies. Volume 172 of Issue 7. 2012. PMID: 22493463


  77. Day LW, Kwon A, Inadomi JM, Walter LC, Somsouk M. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis. Volume 74 of Issue 4. 2011. PMID: 21951478


  78. Day LW, Cello JP, Somsouk M, Inadomi JM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test. Volume 30 of Issue 5. 2011. PMID: 21948130


  79. Shaw JM, Hunt PW, Critchfield JW, McConnell DH, Garcia JC, Pollard RB, Somsouk M, Deeks SG, Shacklett BL. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers. Volume 85 of Issue 21. 2011. PMID: 21880771


  80. Somsouk M, Kornfield R, Vittinghoff E, Inadomi JM, Biggins SW. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk. Volume 17 of Issue 2. 2011. PMID: 21280185


  81. Somsouk M, Guy J, Biggins SW, Vittinghoff E, Kohn MA, Inadomi JM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease. Volume 30 of Issue 7. 2009. PMID: 19604177


  82. Guy J, Somsouk M, Shiboski S, Kerlan R, Inadomi JM, Biggins SW. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt. Volume 7 of Issue 11. 2009. PMID: 19560557


  83. Somsouk M, Yee HF, Biggins SW. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Understanding liver health using the National Center for Health Statistics. Volume 54 of Issue 11. 2009. PMID: 19424799


  84. Inadomi JM, Somsouk M, Madanick RD, Thomas JP, Shaheen NJ. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. A cost-utility analysis of ablative therapy for Barrett's esophagus. Volume 136 of Issue 7. 2009. PMID: 19272389


  85. Somsouk M, Gralnek IM, Inadomi JM. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis. Volume 6 of Issue 6. 2008. PMID: 18550005


  86. Somsouk M, Shergill AK, Grenert JP, Harris H, Cello JP, Shah JN. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral treatment of asymptomatic, HIV-1 infected controllers.., Helicobacter pylori: evidence-based review with a focus on immigrant populations.., Comparison of HIV DNA and RNA in gut-associated lymphoid tissue of HIV-infected controllers and noncontrollers.., Meta-analysis: antibiotic therapy for small intestinal bacterial overgrowth.., Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism.., The immunologic effects of maraviroc intensification in treated HIV-infected individuals with incomplete CD4+ T-cell recovery: a randomized trial.., Late presentation of colorectal cancer in a vulnerable population.., Comparative analysis of measures of viral reservoirs in HIV-1 eradication studies.., Activation, exhaustion, and persistent decline of the antimicrobial MR1-restricted MAIT-cell population in chronic HIV-1 infection.., Short communication: HIV+ viremic slow progressors maintain low regulatory T cell numbers in rectal mucosa but exhibit high T cell activation.., Adherence to colorectal cancer screening: a randomized clinical trial of competing strategies.., Adverse events in older patients undergoing colonoscopy: a systematic review and meta-analysis.., Prevalence of gastric cancer versus colorectal cancer in Asians with a positive fecal occult blood test.., Increased frequency of regulatory T cells accompanies increased immune activation in rectal mucosae of HIV-positive noncontrollers.., Moderate ascites identifies patients with low model for end-stage liver disease scores awaiting liver transplantation who have a high mortality risk.., Ascites improves upon [corrected] serum sodium plus [corrected] model for end-stage liver disease (MELD) for predicting mortality in patients with advanced liver disease.., New model for end stage liver disease improves prognostic capability after transjugular intrahepatic portosystemic shunt.., Understanding liver health using the National Center for Health Statistics.., A cost-utility analysis of ablative therapy for Barrett's esophagus.., Management of obscure occult gastrointestinal bleeding: a cost-minimization analysis.., Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA.., A cost-identification analysis of screening and surveillance of hepatitis C infection in a prospective cohort of dialysis patients.., Will virtual colonoscopy replace optical colonoscopy for colorectal cancer screening?., Proton pump inhibitors and hip fracture: cause for alarm?., Determination of the three-dimensional, solution-phase structure of the macrolide antibiotic oxolide in CD2Cl2 and D2O from NMR constraints.., Constitutive activation of Stat3 signaling pathway in human colorectal carcinoma.., Hepatitis C virus is independently associated with increased insulin resistance after liver transplantation.., Critical elements of the immunoglobulin heavy chain gene enhancers for deregulated expression of bcl-2.., Spontaneous resolution of chronic hepatitis C virus disease after withdrawal of immunosuppression.., Promoter structure and cell cycle dependent expression of the human methylpurine-DNA glycosylase gene.., Partial functional deficiency of E160D flap endonuclease-1 mutant in vitro and in vivo is due to defective cleavage of DNA substrates.. Actinomycosis mimicking a pancreatic head neoplasm diagnosed by EUS-guided FNA. Volume 68 of Issue 1. 2008. PMID: 18291393


  87. Somsouk M, Langfield DE, Inadomi JM, Yee HF. Phenotypic analysis of the unstimulated in vivo HIV CD4 T cell reservoir.., Mechanistic differences underlying HIV latency in the gut and blood contribute to differential responses to latency-reversing agents.., Distinct viral reservoirs in individuals with spontaneous control of HIV-1.., Advanced Notification Calls Prior to Mailed Fecal Immunochemical Test in Previously Screened Patients: a Randomized Controlled Trial.., Changes in gastrointestinal microbial communities influence HIV-specific CD8+ T-cell responsiveness to immune checkpoint blockade.., Obesity and metabolic outcomes in a safety-net health system.., A Root Cause Analysis of Barriers to Timely Colonoscopy in California Safety-Net Health Systems.., Antiretroviral Therapy Concentrations Differ in Gut vs. Lymph Node Tissues and Are Associated With HIV Viral Transcription by a Novel RT-ddPCR Assay.., Standardized Workflows Improve Colonoscopy Follow-Up After Abnormal Fecal Immunochemical Tests in a Safety-Net System.., Effectiveness and cost of organized outreach for colorectal cancer screening: A Randomized Controlled Trial.., Human Immunodeficiency Virus (HIV)-Infected CCR6+ Rectal CD4+ T Cells and HIV Persistence On Antiretroviral Therapy.., HIV-1-induced cytokines deplete homeostatic innate lymphoid cells and expand TCF7-dependent memory NK cells.., The impact of antiretroviral therapy duration on the HIV-1 infection of T-cells within anatomic sites.., Disparities in Hepatocellular Carcinoma Incidence in California: An Update.., TFF3 interacts with LINGO2 to regulate EGFR activation for protection against colitis and gastrointestinal helminths.., Fecal Microbiota Transplantation in Pouchitis: Clinical, Endoscopic, Histologic, and Microbiota Results from a Pilot Study.., HIV and the Gut Microbiota: Composition, Consequences, and Avenues for Amelioration.., CD32-RNA Co-localizes with HIV-RNA in CD3+ Cells Found within Gut Tissues from Viremic and ART-Suppressed Individuals.., Serum Bovine Immunoglobulins Improve Inflammation and Gut Barrier Function in Persons with HIV and Enteropathy on Suppressive ART.., Fecal microbiota transplant for Crohn disease: A study evaluating safety, efficacy, and microbiome profile.., Increased mucosal neutrophil survival is associated with altered microbiota in HIV infection.., Cellular HIV Reservoirs and Viral Rebound from the Lymphoid Compartments of 4'-Ethynyl-2-Fluoro-2'-Deoxyadenosine (EFdA)-Suppressed Humanized Mice.., Low Literacy Level Instructions and Reminder Calls Improve Patient Handling of Fecal Immunochemical Test Samples.., Gut and blood differ in constitutive blocks to HIV transcription, suggesting tissue-specific differences in the mechanisms that govern HIV latency.., Population health interventions to improve colorectal cancer screening by fecal immunochemical tests: A systematic review.., Macrophage Activation Marker Soluble CD163 is a Dynamic Marker of Liver Fibrogenesis in HIV/HCV Coinfection.., Colorectal Cancer Incidence Trends by Age, Stage, and Racial/Ethnic Group in California, 1990-2014.., Race/ethnicity is an independent risk factor for autoimmune hepatitis among the San Francisco underserved.., Yield of Colonoscopy After a Positive Result From a Fecal Immunochemical Test OC-Light.., A20 upregulation during treated HIV disease is associated with intestinal epithelial cell recovery and function.., Increased HIV-1 transcriptional activity and infectious burden in peripheral blood and gut-associated CD4+ T cells expressing CD30.., Hospitalizations for Autoimmune Hepatitis Disproportionately Affect Black and Latino Americans.., Differential Expression of CD8+ T Cell Cytotoxic Effector Molecules in Blood and Gastrointestinal Mucosa in HIV-1 Infection.., Missed Opportunities in Colorectal Cancer Prevention in Patients With Inadequate Bowel Preparations.., Colorectal Cancer Screening Among South Asians: Focus Group Findings on Attitudes, Knowledge, Barriers and Facilitators.., The San Francisco Cancer Initiative: A Community Effort To Reduce The Population Burden Of Cancer.., Risk factors for postpolypectomy bleeding in patients receiving anticoagulation or antiplatelet medications.., Detection of HIV-1-specific gastrointestinal tissue resident CD8+ T-cells in chronic infection.., An Optimized and Validated Method for Isolation and Characterization of Lymphocytes from HIV+ Human Gut Biopsies.., Evaluation of oral serum-derived bovine immunoglobulins in HIV-infected patients with chronic idiopathic diarrhea.., A Randomized Controlled Trial of Lisinopril to Decrease Lymphoid Fibrosis in Antiretroviral-Treated, HIV-infected Individuals.., Circulating LOXL2 Levels Reflect Severity of Intestinal Fibrosis and GALT CD4+ T Lymphocyte Depletion in Treated HIV Infection.., Limited engraftment of donor microbiome via one-time fecal microbial transplantation in treated HIV-infected individuals.., Human Immunodeficiency Virus Persistence and T-Cell Activation in Blood, Rectal, and Lymph Node Tissue in Human Immunodeficiency Virus-Infected Individuals Receiving Suppressive Antiretroviral Therapy.., Replication of CMV in the gut of HIV-infected individuals and epithelial barrier dysfunction.., Mucosal stromal fibroblasts markedly enhance HIV infection of CD4+ T cells.., Urgent colonoscopy in patients with lower GI bleeding: a systematic review and meta-analysis.., Inadequate Utilization of Diagnostic Colonoscopy Following Abnormal FIT Results in an Integrated Safety-Net System.., Predominance of weakly cytotoxic, T-betLowEomesNeg CD8+ T-cells in human gastrointestinal mucosa: implications for HIV infection.., Bacteroides are associated with GALT iNKT cell function and reduction of microbial translocation in HIV-1 infection.., Protective association of colonoscopy against proximal and distal colon cancer and patterns in interval cancer.., Longitudinal Genetic Characterization Reveals That Cell Proliferation Maintains a Persistent HIV Type 1 DNA Pool During Effective HIV Therapy.., Gut epithelial barrier and systemic inflammation during chronic HIV infection.., The immunologic effects of mesalamine in treated HIV-infected individuals with incomplete CD4+ T cell recovery: a randomized crossover trial.., Lymphoid fibrosis occurs in long-term nonprogressors and persists with antiretroviral therapy but may be reversible with curative interventions.., The CD8? memory stem T cell (T(SCM)) subset is associated with improved prognosis in chronic HIV-1 infection.., HIV-infected individuals with low CD4/CD8 ratio despite effective antiretroviral therapy exhibit altered T cell subsets, heightened CD8+ T cell activation, and increased risk of non-AIDS morbidity and mortality.., Esophageal varices on computed tomography and subsequent variceal hemorrhage.., Challenges and possible solutions to colorectal cancer screening for the underserved.., Non-physician performance of lower and upper endoscopy: a systematic review and meta-analysis.., Adverse events in older patients undergoing ERCP: a systematic review and meta-analysis.., Discordance between peripheral and colonic markers of inflammation during suppressive ART.., A comparison of methods for measuring rectal HIV levels suggests that HIV DNA resides in cells other than CD4+ T cells, including myeloid cells.., Commentary: Towards an effective and safe treatment of small intestine bacterial overgrowth - Authors' reply.., The HIV-1 reservoir in eight patients on long-term suppressive antiretroviral therapy is stable with few genetic changes over time.., Prospective antiretroviral